This commit was manufactured by cvs2svn to create tag 'v201105140018'.v201105140018

Sprout from master 2011-05-14 04:08:21 UTC Beth Tibbitts <tibbitts@us.ibm.com> 'update cdt version'
Delete:
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    rms/org.eclipse.ptp.rm.smoa.ui/src/org/eclipse/ptp/rm/smoa/ui/wizards/SMOAResourceManagerConfigurationWizardPage.java
    rms/org.eclipse.ptp.rm.smoa.ui/src/org/eclipse/ptp/rm/smoa/ui/wizards/SMOAResourceManagerFileServicesPage.java
    rms/org.eclipse.ptp.rm.smoa.ui/src/org/eclipse/ptp/rm/smoa/ui/wizards/messages.properties
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    tools/etfw/org.eclipse.ptp.etfw.feedback.sample/src/org/eclipse/ptp/etfw/feedback/sample/SampleFeedbackView.java
    tools/etfw/org.eclipse.ptp.etfw.feedback.sample/src/org/eclipse/ptp/etfw/feedback/sample/SampleShowFeedbackHandler.java
    tools/etfw/org.eclipse.ptp.etfw.feedback.sample/src/org/eclipse/ptp/etfw/feedback/sample/actions/SampleFeedbackAction.java
    tools/pldt/org.eclipse.ptp.pldt.tests/.classpath
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    tools/pldt/org.eclipse.ptp.pldt.tests/resources/HelloFortranMPI.f90
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    tools/pldt/org.eclipse.ptp.pldt.tests/resources/helloOpenMP.c
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    tools/samples/org.eclipse.ptp.pldt.sampleCDTstaticAnalysis/.classpath
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    tools/samples/org.eclipse.ptp.pldt.sampleCDTstaticAnalysis/src/org/eclipse/ptp/pldt/sampleCDTstaticAnalysis/handlers/BuildCFGraphHandler.java
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diff --git a/rms/org.eclipse.ptp.rm.smoa.core/src/org/eclipse/ptp/rm/smoa/core/rmsystem/JobThread.java b/rms/org.eclipse.ptp.rm.smoa.core/src/org/eclipse/ptp/rm/smoa/core/rmsystem/JobThread.java
deleted file mode 100644
index 95ce6ca9b..000000000
--- a/rms/org.eclipse.ptp.rm.smoa.core/src/org/eclipse/ptp/rm/smoa/core/rmsystem/JobThread.java
+++ /dev/null
@@ -1,442 +0,0 @@
-/*******************************************************************************
- * Copyright (c) 2010 Poznan Supercomputing and Networking Center
- * All rights reserved. This program and the accompanying materials
- * are made available under the terms of the Eclipse Public License v1.0
- * which accompanies this distribution, and is available at
- * http://www.eclipse.org/legal/epl-v10.html
- *
- * Contributors:
- *     Jan Konczak (PSNC) - initial implementation
- ******************************************************************************/
-
-package org.eclipse.ptp.rm.smoa.core.rmsystem;
-
-import java.io.BufferedReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import java.util.BitSet;
-import java.util.HashMap;
-import java.util.Map;
-
-import org.eclipse.core.filesystem.IFileStore;
-import org.eclipse.core.runtime.CoreException;
-import org.eclipse.ptp.core.attributes.AttributeManager;
-import org.eclipse.ptp.core.elements.IPJob;
-import org.eclipse.ptp.core.elements.IPMachine;
-import org.eclipse.ptp.core.elements.IPNode;
-import org.eclipse.ptp.core.elements.IPResourceManager;
-import org.eclipse.ptp.core.elements.attributes.JobAttributes;
-import org.eclipse.ptp.core.elements.attributes.ProcessAttributes;
-import org.eclipse.ptp.remote.core.IRemoteFileManager;
-import org.eclipse.ptp.remote.core.PTPRemoteCorePlugin;
-import org.eclipse.ptp.rm.smoa.core.rmsystem.PoolingIntervalsAndStatic.SMOAJobState;
-import org.eclipse.ptp.rm.smoa.core.rservices.SMOAFileStore;
-import org.eclipse.ptp.rm.smoa.core.util.NotifyShell;
-
-import com.smoa.comp.sdk.SMOAFactory;
-import com.smoa.comp.sdk.exceptions.FileNotFoundException;
-import com.smoa.comp.sdk.exceptions.NotAuthorizedException;
-import com.smoa.comp.sdk.exceptions.UnknownActivityIdentifierException;
-import com.smoa.comp.sdk.types.ActivityEndpointReference;
-import com.smoa.comp.sdk.types.SMOAActivityStatus;
-
-/**
- * Thread for monitoring a single job - checks state and transfers standard
- * output. Allows job's termination.
- */
-class JobThread extends Thread {
-	// The RM that created the job
-	private final SMOAResourceManager rm;
-	private final IPResourceManager pRM;
-
-	// The eclipse job control object
-	private final IPJob jobControl;
-
-	// The SMOA job control object
-	private final ActivityEndpointReference activityIdentifier;
-
-	private final SMOAFactory factory;
-	private final IRemoteFileManager fileManager;
-
-	// Remote files used by launch
-	private final IFileStore out;
-	private final IFileStore err;
-	private final IFileStore sh;
-	private final IFileStore machinefile;
-
-	// Offsets for the output files
-	private int stdOutOffset = 0;
-	private int stdErrOffset = 0;
-
-	/**
-	 * Constructs the job thread for monitoring a single job
-	 */
-	public JobThread(SMOAResourceManager rm, SMOAFactory factory, ActivityEndpointReference activityEndpointReference,
-			IPJob jobControl, String out, String err, String sh, String machinefile) {
-		this.rm = rm;
-		this.pRM = (IPResourceManager) rm.getAdapter(IPResourceManager.class);
-		this.factory = factory;
-		this.activityIdentifier = activityEndpointReference;
-		this.jobControl = jobControl;
-
-		this.setPriority(MIN_PRIORITY);
-		this.setName("JobListener for " + activityIdentifier.getActivityUUID()); //$NON-NLS-1$
-
-		final IRemoteFileManager fileManager_t = PTPRemoteCorePlugin.getDefault()
-				.getRemoteServices(rm.getControlConfiguration().getRemoteServicesId())
-				.getFileManager(rm.getControlConfiguration().getConnection());
-
-		fileManager = fileManager_t;
-
-		this.out = fileManager.getResource(out);
-		this.err = fileManager.getResource(err);
-		if (sh != null) {
-			this.sh = fileManager.getResource(sh);
-		} else {
-			this.sh = null;
-		}
-		if (machinefile != null) {
-			this.machinefile = fileManager.getResource(machinefile);
-		} else {
-			this.machinefile = null;
-		}
-
-	}
-
-	/** Adds given text to standard error, and makes it appear on console */
-	void appendStdErr(String stderr) {
-		final AttributeManager outManager = new AttributeManager();
-		outManager.addAttribute(ProcessAttributes.getStderrAttributeDefinition().create(stderr));
-		final BitSet bs = new BitSet();
-		bs.set(jobControl.getProcessJobRanks().nextSetBit(0));
-		jobControl.addProcessAttributes(bs, outManager);
-	}
-
-	/** Adds given text to standard output, and makes it appear on console */
-	void appendStdOut(String stdout) {
-		final AttributeManager outManager = new AttributeManager();
-		outManager.addAttribute(ProcessAttributes.getStdoutAttributeDefinition().create(stdout));
-		final BitSet bs = new BitSet();
-		bs.set(jobControl.getProcessJobRanks().nextSetBit(0));
-		jobControl.addProcessAttributes(bs, outManager);
-	}
-
-	/**
-	 * Changes job state
-	 */
-	void changeState(JobAttributes.State newState) {
-		if (JobAttributes.State.RUNNING.equals(newState)) {
-			enteredRunPhase();
-		}
-
-		final AttributeManager am = new AttributeManager();
-		am.addAttribute(JobAttributes.getStateAttributeDefinition().create(newState));
-		rm.getMonitor().getRuntimeSystem().changeJob(jobControl.getID(), am);
-	}
-
-	/**
-	 * Called when the process state becomes RUNNING.
-	 * 
-	 * This is the proper moment for identifying where the processes are
-	 * located, so that debug routing files may be written.
-	 */
-	private void enteredRunPhase() {
-		if (machinefile != null) {
-			try {
-				final BufferedReader reader = new BufferedReader(new InputStreamReader(machinefile.openInputStream(0, null)));
-
-				final IPMachine machine = pRM.getMachines()[0];
-
-				final Map<String, String> nodesByName = new HashMap<String, String>();
-				for (final IPNode ipNode : machine.getNodes()) {
-					nodesByName.put(ipNode.getName(), ipNode.getID());
-				}
-
-				String line;
-				int i = 0;
-				while ((line = reader.readLine()) != null) {
-					final BitSet bs = new BitSet();
-					bs.set(i++);
-					final AttributeManager attrs = new AttributeManager();
-
-					if (!nodesByName.containsKey(line)) {
-						rm.getMonitor().getRuntimeSystem().addUnknownNode(machine, line);
-						nodesByName.put(line, ((Integer) nodesByName.size()).toString());
-						NotifyShell.open(Messages.JobThread_UnknownNode_title, Messages.JobThread_UnknownNode_text_1 + line
-								+ Messages.JobThread_UnknownNode_text_2);
-						attrs.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create(nodesByName.get(line)));
-					} else {
-						attrs.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create(nodesByName.get(line)));
-					}
-					jobControl.addProcessesByJobRanks(bs, attrs);
-				}
-				return;
-			} catch (final CoreException e) {
-				NotifyShell.open(Messages.JobThread_ErrorOpeningRemote, e.toString());
-
-				final BitSet bs = new BitSet(1);
-				bs.set(0);
-				final AttributeManager jam = new AttributeManager();
-				jam.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create("0")); //$NON-NLS-1$
-				jobControl.addProcessesByJobRanks(bs, jam);
-			} catch (final IOException e) {
-				NotifyShell.open(Messages.JobThread_ErrorReadingRemote, e.toString());
-
-				if (jobControl.getProcessJobRanks() != null && !jobControl.getProcessJobRanks().isEmpty()) {
-					return;
-				}
-
-				final BitSet bs = new BitSet(1);
-				bs.set(0);
-				final AttributeManager jam = new AttributeManager();
-				jam.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create("0")); //$NON-NLS-1$
-				jobControl.addProcessesByJobRanks(bs, jam);
-			}
-		} else {
-			final BitSet bs = new BitSet(1);
-			bs.set(0);
-			final AttributeManager jam = new AttributeManager();
-			jam.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create("0")); //$NON-NLS-1$
-			jobControl.addProcessesByJobRanks(bs, jam);
-		}
-	}
-
-	/**
-	 * Called if an exception has been thrown while monitoring job
-	 */
-	void exceptionCaught(Exception e) {
-		final AttributeManager am = new AttributeManager();
-
-		am.addAttribute(JobAttributes.getStatusAttributeDefinition().create(Messages.JobThread_ExceptionByMonitoring));
-
-		am.addAttribute(JobAttributes.getStateAttributeDefinition().create(JobAttributes.State.COMPLETED));
-
-		am.addAttribute(PoolingIntervalsAndStatic.exceptionAttrDef.create(e.getLocalizedMessage()));
-
-		NotifyShell.open(Messages.JobThread_ExceptionByMonitoring, e.getLocalizedMessage());
-
-		rm.getMonitor().getRuntimeSystem().changeJob(jobControl.getID(), am);
-	}
-
-	/** Executed after the job reached terminal state */
-	private void jobFinished(SMOAActivityStatus status) {
-
-		try {
-			// If the job jumped from queued to finished state, we didn't
-			// add any processes yet
-			if (jobControl.getProcessJobRanks() == null || jobControl.getProcessJobRanks().isEmpty()) {
-				final BitSet bs = new BitSet(1);
-				bs.set(0);
-				final AttributeManager jam = new AttributeManager();
-				jam.addAttribute(ProcessAttributes.getNodeIdAttributeDefinition().create("0")); //$NON-NLS-1$
-				jobControl.addProcessesByJobRanks(bs, jam);
-			}
-
-			processOutAndErr();
-
-			try {
-				out.delete(0, null);
-				err.delete(0, null);
-				if (sh != null) {
-					sh.delete(0, null);
-				}
-				if (machinefile != null) {
-					machinefile.delete(0, null);
-				}
-			} catch (final CoreException e) {
-				NotifyShell.open(Messages.JobThread_ErrorDeletingTempFiles_title, Messages.JobThread_ErrorDeletingTempFiles_text
-						+ e.getLocalizedMessage());
-				e.printStackTrace();
-			}
-		} catch (final RuntimeException e) {
-			// Happens if there is a problem with stdout/err file
-		}
-
-		final AttributeManager am = new AttributeManager();
-
-		String jobStatus = null;
-
-		switch (PoolingIntervalsAndStatic.getEquivalentJobState(status)) {
-		case Finished:
-			jobStatus = Messages.JobThread_JobStateFinisedWithStatus + status.getEndStatus().getExitStatus();
-			break;
-		case Failed:
-			jobStatus = Messages.JobThread_JobStateFailed;
-			break;
-		case Cancelled:
-			jobStatus = Messages.JobThread_JobStateCancelled;
-			break;
-		default:
-			jobStatus = Messages.JobThread_JobStateUnknown;
-		}
-
-		am.addAttribute(JobAttributes.getStatusAttributeDefinition().create(jobStatus));
-
-		JobAttributes.State state;
-		state = JobAttributes.State.COMPLETED;
-		am.addAttribute(JobAttributes.getStateAttributeDefinition().create(state));
-
-		rm.getMonitor().getRuntimeSystem().changeJob(jobControl.getID(), am);
-	}
-
-	/**
-	 * Takes care about reading out and err streams and forwards them on console
-	 */
-	private void processOutAndErr() {
-
-		/* Out */
-		InputStream is;
-		try {
-			if (out instanceof SMOAFileStore) {
-				is = ((SMOAFileStore) out).openInputStream(0, null, stdOutOffset);
-			} else {
-				is = out.openInputStream(0, null);
-				is.skip(stdOutOffset);
-			}
-
-			final byte[] buffer = new byte[512];
-
-			for (int count = is.read(buffer); count > 0; count = is.read(buffer)) {
-				stdOutOffset += count;
-				appendStdOut(new String(buffer).substring(0, count));
-			}
-		} catch (final CoreException e) {
-			if (e.getCause() instanceof FileNotFoundException) {
-				return;
-			}
-			throw new RuntimeException(e);
-		} catch (final IOException e) {
-			NotifyShell.open(Messages.JobThread_ErrorOut, e.getLocalizedMessage());
-		}
-
-		/* Err */
-
-		try {
-			if (err instanceof SMOAFileStore) {
-				is = ((SMOAFileStore) err).openInputStream(0, null, stdErrOffset);
-			} else {
-				is = err.openInputStream(0, null);
-				is.skip(stdErrOffset);
-			}
-
-			final byte[] buffer = new byte[512];
-
-			for (int count = is.read(buffer); count > 0; count = is.read(buffer)) {
-				stdErrOffset += count;
-				if (count == buffer.length) {
-					appendStdErr(new String(buffer));
-				} else {
-					appendStdErr(new String(buffer).substring(0, count));
-				}
-			}
-		} catch (final CoreException e) {
-			if (e.getCause() instanceof FileNotFoundException) {
-				return;
-			}
-			throw new RuntimeException(e);
-		} catch (final IOException e) {
-			NotifyShell.open(Messages.JobThread_ErrorErr, e.getLocalizedMessage());
-		}
-	}
-
-	/** Loop for monitoring task */
-	@Override
-	public void run() {
-		try {
-
-			SMOAActivityStatus status = factory.getActivityStatus(activityIdentifier);
-
-			SMOAActivityStatus prevStatus = null;
-
-			long nextStateCheck = System.currentTimeMillis();
-			long nextOutCheck = nextStateCheck;
-
-			// Till the state is not final, we pool the job and out streams
-			while (true) {
-
-				// Status
-				if (nextStateCheck <= System.currentTimeMillis()) {
-					nextStateCheck = System.currentTimeMillis() + PoolingIntervalsAndStatic.getPoolingIntervalTask();
-
-					final SMOAJobState statusS = PoolingIntervalsAndStatic.getEquivalentJobState(status);
-
-					SMOAJobState prevstatusS = null;
-
-					if (prevStatus != null) {
-						prevstatusS = PoolingIntervalsAndStatic.getEquivalentJobState(prevStatus);
-					}
-
-					if (prevStatus == null || !statusS.equals(prevstatusS)) {
-						switch (statusS) {
-						case Stage_in:
-						case Held:
-						case Queued:
-							changeState(JobAttributes.State.STARTING);
-							break;
-						case Stage_out:
-						case Executing:
-							changeState(JobAttributes.State.RUNNING);
-							break;
-						case Suspended:
-							changeState(JobAttributes.State.SUSPENDED);
-							break;
-
-						case Cancelled:
-							break;
-						case Failed:
-							break;
-						case Finished:
-							break;
-						}
-						prevStatus = status;
-					}
-					status = factory.getActivityStatus(activityIdentifier);
-
-					if (status.isFinalState()) {
-						break;
-					}
-				}
-
-				// Out
-				final JobAttributes.State state = jobControl.getAttribute(JobAttributes.getStateAttributeDefinition()).getValue();
-				if (state == JobAttributes.State.RUNNING && nextOutCheck <= System.currentTimeMillis()) {
-					nextOutCheck = System.currentTimeMillis() + PoolingIntervalsAndStatic.getPoolingIntervalOut();
-
-					processOutAndErr();
-				}
-				try {
-					final long nextCheck = Math.min(nextOutCheck - System.currentTimeMillis(),
-							nextStateCheck - System.currentTimeMillis());
-					if (nextCheck > 0) {
-						sleep(nextCheck);
-					}
-				} catch (final InterruptedException e) {
-					// The job has been terminated, ignore
-				}
-			}
-
-			jobFinished(status);
-
-		} catch (final NotAuthorizedException e) {
-			exceptionCaught(e);
-		} catch (final UnknownActivityIdentifierException e) {
-			exceptionCaught(e);
-		}
-
-		rm.removeJobThread(jobControl.getID());
-	}
-
-	/**
-	 * Terminates the monitored job
-	 */
-	public boolean terminate() {
-		try {
-			factory.terminateActivity(activityIdentifier);
-			this.interrupt();
-		} catch (final Exception e) {
-			return false;
-		}
-		return true;
-	}
-}